Package index • pSI

Compute the specificity index

specificity.index(): Specificity Index Statistic

Summarize the genes specific to each cell type

pSI.list(): Convert pSI output to gene lists
pSI.count(): Convert pSI output to gene counts

Candidate gene list analysis (CSEA)

candidate.overlap(): Candidate Gene Overlap
fisher.iteration(): Fisher's Exact Test Across All Cell Types and pSI Thresholds

Bundled example data

sample.data: Sample Input and Output pSI Data Sets
candidate.genes: Candidate Gene Lists
dataset.s1: Supplementary Data Set 1: Genes Differentially Expressed in Autistic Cortex

Companion data, downloaded on first use

psi_data(): Download the companion pSI data sets (the former pSI.data package)